next generation (nextgen) sequencing Search Results


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Differences between ILS and ISS strains: Variant Breakdown. a Combined totals of variants that differ between the ILS and ISS strains. Synonymous mutations refer to a SNP(s) that alters the codon <t>sequence</t> but not the amino acid produced. Synonymous and non-synonymous mutations arise from the impact of a SNP on the underlying codon. Frameshifts are any indel not divisible by three, whereas deletions and insertions retain the reading frame. Variants are counted once per gene. b Combined totals of structural variations that differ between ILS and ISS strains. Losses and gains refer to changes in copy number, whereas a deletion is a complete loss/absence of a region. Chromosomal translocations refer to exchanges of large segments between chromosomes and inversions are reversals. c Distribution of structural variations by type, summarized by a sliding window approach (500 k windows with 100 k step size) (Color figure online)
Next Generation Deep Sequencing, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
Next Generation Sequencing Tools, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
Next Generation Rna Sequencing Nextgen Rnaseq, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
Next Generation Sequencing Nextgen Rna Seq, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
Generation Sequencing Ngs, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.
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Image Search Results


Differences between ILS and ISS strains: Variant Breakdown. a Combined totals of variants that differ between the ILS and ISS strains. Synonymous mutations refer to a SNP(s) that alters the codon sequence but not the amino acid produced. Synonymous and non-synonymous mutations arise from the impact of a SNP on the underlying codon. Frameshifts are any indel not divisible by three, whereas deletions and insertions retain the reading frame. Variants are counted once per gene. b Combined totals of structural variations that differ between ILS and ISS strains. Losses and gains refer to changes in copy number, whereas a deletion is a complete loss/absence of a region. Chromosomal translocations refer to exchanges of large segments between chromosomes and inversions are reversals. c Distribution of structural variations by type, summarized by a sliding window approach (500 k windows with 100 k step size) (Color figure online)

Journal: Mammalian Genome

Article Title: Genome characterization of the selected long- and short-sleep mouse lines

doi: 10.1007/s00335-016-9663-6

Figure Lengend Snippet: Differences between ILS and ISS strains: Variant Breakdown. a Combined totals of variants that differ between the ILS and ISS strains. Synonymous mutations refer to a SNP(s) that alters the codon sequence but not the amino acid produced. Synonymous and non-synonymous mutations arise from the impact of a SNP on the underlying codon. Frameshifts are any indel not divisible by three, whereas deletions and insertions retain the reading frame. Variants are counted once per gene. b Combined totals of structural variations that differ between ILS and ISS strains. Losses and gains refer to changes in copy number, whereas a deletion is a complete loss/absence of a region. Chromosomal translocations refer to exchanges of large segments between chromosomes and inversions are reversals. c Distribution of structural variations by type, summarized by a sliding window approach (500 k windows with 100 k step size) (Color figure online)

Article Snippet: However, technological and analytical advances, including high-throughput gene expression analysis and “Next-Generation” deep sequencing technologies (NextGen), are providing an unprecedented opportunity to examine the molecular basis of QTLs (Harrison ).

Techniques: Variant Assay, Sequencing, Produced

Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.

Journal: PLoS ONE

Article Title: A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq

doi: 10.1371/journal.pone.0159028

Figure Lengend Snippet: Summary of hard clipping analysis for broad estimation of transcriptome-wide fusion gene candidates. The sequential steps taken and number of reads complying with each filtering step, per sample, are presented. S1–3 are the independent cocaine-exposed samples, S4–6 represent saline-treated animals.

Article Snippet: Although agouti was one of the first examples, the use of next generation (NextGen) sequencing tools has more recently revealed broad-based formation of FTs across the mammalian genome involving different types of repeats and genes [ , , – ].

Techniques: Saline, Sequencing, Control